
FLCore - Core Package of FLR, Fisheries Modelling in R
Core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at <http://flrproject.org/>.
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fisheriesflrfisheries-modelling
9.05 score 17 stars 25 dependents 1.2k scripts 9 downloads
ggplotFL - Using ggplot2 in FLR
Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various FLR classes, (2) ggplot-based versions of standard plots in the FLCore package, and (3) new geoms for using FLR objects.
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visualizationggplot2fisheriesflr
7.89 score 4 stars 14 dependents 622 scripts
FLasher - Projection and Forecasting of Fish Populations, Stocks and Fleets
Projection of future population and fishery dynamics is carried out for a given set of management targets. A system of equations is solved, using Automatic Differentation (AD), for the levels of effort by fishery (fleet) that will result in the required abundances, catches or fishing mortalities.
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forecastfisheriesflrcpp
7.50 score 2 stars 7 dependents 312 scripts
FLBRP - Reference Points for Fisheries Management
Calculates a range of biological reference points based upon yield per recruit and stock recruit based equilibrium calculations. These include F based reference points like F0.1, FMSY and biomass based reference points like BMSY.
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reference pointsfisheriesflrcpp
6.62 score 2 stars 6 dependents 386 scripts
mse - Tools for Running Management Strategy Evaluations using FLR
A set of functions and methods to enable the development and running of Management Strategy Evaluation (MSE) analyses, using the FLR packages and classes and the a4a methods and algorithms.
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simulationmsefisheriesflra4amanagement-strategy-evaluation
6.08 score 4 stars 4 dependents 178 scriptsspict - Stochastic surplus Production model in Continuous-Time (SPiCT)
Fits a surplus production model to fisheries catch and biomass index data.
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cpp
5.41 score 144 scriptsjjmR - Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model
Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model.
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5.13 score 3 stars 1 dependents 99 scriptsSlick - Interactive Visualization of MSE Results
A framework for visualizing and exploring results of a Management Strategy Evaluation (MSE). The publication quality figures and tables can be developed directly from the R console, or interactively explored with the 'Slick' App. For more details, see the 'Slick' website <https://slick.bluematterscience.com>.
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fisheries-managementmanagement-strategy-evaluationmser-shiny
5.01 score 5 stars 17 scripts 198 downloads
FLFishery - Classes and Methods for Simpler Fleet/Fishery Modelling
A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.
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fisheriesflr
3.84 score 8 dependents 19 scripts
FLSRTMB - FLSR in TMB
Estimates FLR spawner recruitment relationships in TMB
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stock-recruitfisheriesflrtmbadcpp
3.81 score 1 stars 1 dependents 43 scripts
