No packages match

FLCore - Core Package of FLR, Fisheries Modelling in R

Core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at <http://flrproject.org/>.

Last updated

fisheriesflrfisheries-modelling

9.05 score 17 stars 25 dependents 1.2k scripts 9 downloads

ggplotFL - Using ggplot2 in FLR

Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various FLR classes, (2) ggplot-based versions of standard plots in the FLCore package, and (3) new geoms for using FLR objects.

Last updated

visualizationggplot2fisheriesflr

7.89 score 4 stars 14 dependents 622 scripts

FLasher - Projection and Forecasting of Fish Populations, Stocks and Fleets

Projection of future population and fishery dynamics is carried out for a given set of management targets. A system of equations is solved, using Automatic Differentation (AD), for the levels of effort by fishery (fleet) that will result in the required abundances, catches or fishing mortalities.

Last updated

forecastfisheriesflrcpp

7.50 score 2 stars 7 dependents 312 scripts

TAF - Transparent Assessment Framework for Reproducible Research

General framework to organize data, methods, and results used in reproducible scientific analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R, report.R) that are run sequentially. Each script starts by reading files from a previous step and ends with writing out files for the next step. Convenience functions are provided to version control the required data and software, run analyses, clean residues from previous runs, manage files, manipulate tables, and produce figures. With a focus on stability and reproducible analyses, the TAF package comes with no dependencies. TAF forms a base layer for the 'icesTAF' package and other scientific applications.

Last updated

7.40 score 3 stars 3 dependents 427 scripts 418 downloads

FLBRP - Reference Points for Fisheries Management

Calculates a range of biological reference points based upon yield per recruit and stock recruit based equilibrium calculations. These include F based reference points like F0.1, FMSY and biomass based reference points like BMSY.

Last updated

reference pointsfisheriesflrcpp

6.62 score 2 stars 6 dependents 386 scripts

mse - Tools for Running Management Strategy Evaluations using FLR

A set of functions and methods to enable the development and running of Management Strategy Evaluation (MSE) analyses, using the FLR packages and classes and the a4a methods and algorithms.

Last updated

simulationmsefisheriesflra4amanagement-strategy-evaluation

6.08 score 4 stars 4 dependents 178 scripts

spict - Stochastic surplus Production model in Continuous-Time (SPiCT)

Fits a surplus production model to fisheries catch and biomass index data.

Last updated

cpp

5.41 score 144 scripts

jjmR - Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model

Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model.

Last updated

5.13 score 3 stars 1 dependents 99 scripts

Slick - Interactive Visualization of MSE Results

A framework for visualizing and exploring results of a Management Strategy Evaluation (MSE). The publication quality figures and tables can be developed directly from the R console, or interactively explored with the 'Slick' App. For more details, see the 'Slick' website <https://slick.bluematterscience.com>.

Last updated

fisheries-managementmanagement-strategy-evaluationmser-shiny

5.01 score 5 stars 17 scripts 198 downloads

mseviz - Plots and Visualization Tools for Management Strategy Evaluation Results

A set of plots and visualization tools to explore and present the results of Management Strategy Evaluation (MSE) analyses.

Last updated

4.19 score 31 scripts

FLFishery - Classes and Methods for Simpler Fleet/Fishery Modelling

A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.

Last updated

fisheriesflr

3.84 score 8 dependents 19 scripts

FLSRTMB - FLSR in TMB

Estimates FLR spawner recruitment relationships in TMB

Last updated

stock-recruitfisheriesflrtmbadcpp

3.81 score 1 stars 1 dependents 43 scripts

FLjjm - Running the JJM Stock Assessment Model Inside the MSE FLR System

Runs the JJM stock assessment model for Chilean Jack Mackerel inside the MSE system of FLR's mse package.

Last updated

3.74 score 8 scripts

msemodules - Modules and Functions for the mse Package

A number of additional modules and auxiliary functions for the 'mse' package are provided here.

Last updated

2.65 score 8 scripts